rs108236779 SNP Detail

Summary

• ID
  rs108236779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8418084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTTCTG AGAGGCATTT
  ACTTTACCTA CCTTAAGAAT TGCAGATGTT CATCCTATCA GCATACAGAC AAAAAGAACA
  AAAGTCATTA CTGTTCGTTG TGCATGTATG AAAATGCATA CTGGGCCTGC AAGATGACTC
  AGTTCTGAAA CAAGGAAATC CAGAAAGAAA GGTAAAAAAA AAGTAAACAA AAAAATTATC
  R
  TTTAAAATGT TTACATCTTC TTTTATGTAT TTCTGACTAT ATTTATTTGT ATTATATATG
  TATATATATG TATATATATG TATATATATA TAGTCTATTG ATATATAAAT CCAAACTTGT
  ATAACATAAC TATTTTTTTC TGAGCTTTAA AAGTAGAAAG TATCAAAAAA AATCTACTTA
  TTTCCTAGGT TACTGTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132968471	ENSMUSSNP1462886	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108236779					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8418084 () rs orientation: forward

Symbol	Name	Function Class
Gm16043	predicted gene 16043	1925 bp downstream
Gm45062	predicted gene 45062	Intron
Rr626392	regulatory region 626392	886 bp distal
Rr626393	regulatory region 626393	1954 bp proximal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron