rs108231808 SNP Detail

Summary

• ID
  rs108231808
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCGTCAG AACGAGGGAC ACTCACCCGC GTCAGCGCAG
  AGCACTCACA CACAGGAAGT AGTCGTTCGC CCGTTGCCAG GGTGAGGAAG CGGGAGTGGC
  S
  TAAAGCCTTT CCATTGGTCG ACGTGCACAC GTGGCCGGAA GCAGACGCCC CGCGAGCCTG
  AGTCCTAATC GCCTAGGCTA TAGCGTCTCT CTCTTTAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147670573	ENSMUSSNP6403749	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108231808					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908748 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12337	CpG island 12337			within coordinates
Rr397340	regulatory region 397340			within coordinates
Rr566073	regulatory region 566073			79 bp distal
Rr566074	regulatory region 566074			972 bp distal
Rr566075	regulatory region 566075			363 bp distal
Rr566076	regulatory region 566076			within coordinates
Tasp1	taspase, threonine aspartase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			981 bp upstream
Tssr26543	transcription start site region 26543			32 bp upstream