rs108215560 SNP Detail

Summary

• ID
  rs108215560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191710362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCTCAAT ATGAAGAAAA CTGACTGAGA TTCACCCGTT
  CACCCACCCA TTTACCCGCC TCTCCTCTGC TCACCTATCC ACCTACCTAT CAACAGATCC
  Y
  TCTATCCATA TATGTATCCA TTCATCCATC AACTCACCTA CTTATCCACT CCCATCCCCT
  GATCCATCCA CCCATCCTCT GATCCAACCA CCCACTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146512955	ENSMUSSNP3838041	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320196692	CHEV_1_193802282	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108215560					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191710362 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70534	predicted gene, 70534			217 bp upstream
Rd3	retinal degeneration 3			Intron
				mRNA-UTR
Rr426276	regulatory region 426276			1018 bp distal
Rr426277	regulatory region 426277			836 bp distal
Rr426278	regulatory region 426278			886 bp proximal
Tssr10797	transcription start site region 10797			1012 bp downstream
Tssr10798	transcription start site region 10798			1001 bp downstream
Tssr10799	transcription start site region 10799			956 bp downstream
Tssr10800	transcription start site region 10800			142 bp downstream
Tssr10801	transcription start site region 10801			110 bp downstream