rs108209222 SNP Detail

Summary

• ID
  rs108209222
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153567037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAATGATGTC AGTGGCTCTT GTAGAGCAGA CGTACTGGAG
  GGAGGGATAG AGAACACAGA GAGTGATTGT ATATTCAAGG TTGGGGAGGT GGCATTGGAA
  A
  TTAGGGTGGG GAAAGGAGAG GCCTCATCCA ACGGAAGTAA AGAAGTAGCC ATTTCAGGCA
  GAAGAGAGGA CTTTGGGATA GATGGTAGGT GGGCATCCCT A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148002230	ENSMUSSNP736773	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108209222					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153567037 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	975 bp downstream
Rr567732	regulatory region 567732	1659 bp distal
Rr567733	regulatory region 567733	289 bp distal