rs108208601 SNP Detail

Summary

• ID
  rs108208601
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121162894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAAAGGT GTGCGCCACT
  ACCACCTGGT TGGCATAATA CTTTGATTAG TTGTCTGCTC AGAGTCTCAC AAGGGTAAAC
  TCAAAGTGAC AGCTGACCCT GGCTCTTTCT TCAAGCTCAT ACAGGTCATT GCTGGCAGAA
  TTTAGTCCTC GTAGTTGCAA GGCTCCCATT AACTGCTCTT CCCCGCTTCC ACCCCCCCCC
  A
  TTTTTTTTTT AATTTTGTTT TGGAAAAAAA AAATGTCTTT ATCTTCTCAA GTCAAACCTG
  GTAGTCCCTG CCTACGGTTC CAACATCTGT GAGCCTGTGA AGTGAAAATG GGGAAACGAA
  GGGAGAAGTT TTCAGATCGA AGCCCATACT TGGCCAAGGG TCTGATCCTA GAAGAAATGA
  CAATCCCAGA CCTCAAATGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135719318	ENSMUSSNP4132477	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108208601					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121162894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	1216 bp proximal
Gm33363	predicted gene, 33363	within coordinates
Rr397973	regulatory region 397973	224 bp upstream
Rr397974	regulatory region 397974	944 bp upstream
Rr584057	regulatory region 584057	within coordinates
Rr584058	regulatory region 584058	375 bp proximal
Rr584059	regulatory region 584059	963 bp proximal
Tssr31438	transcription start site region 31438	337 bp upstream
Tssr31439	transcription start site region 31439	402 bp upstream