rs108201838 SNP Detail

Summary

• ID
  rs108201838
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCCGCGAG CCTGAGTCCT AATCGCCTAG GCTATAGCGT
  CTCTCTCTTT AAGCGTTTGA GCTGAGACAC TCCGCGGTTA TTTCTGGCTT CTGATATCTG
  M
  GGGTTTTTTA AAATATGTAT TTATTGGCCT ATTGGGGGTT TGTTTGTTGT CATAGCTATA
  CAATCGCCGT TGCCCACCTT GCTTTCATTG TGCTCGGTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147670588	ENSMUSSNP2261998	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108201838					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12337	CpG island 12337	within coordinates
Rr397340	regulatory region 397340	8 bp downstream
Rr566073	regulatory region 566073	226 bp distal
Rr566074	regulatory region 566074	1119 bp distal
Rr566075	regulatory region 566075	510 bp distal
Rr566076	regulatory region 566076	within coordinates
Tasp1	taspase, threonine aspartase 1	170 bp upstream
Tssr26542	transcription start site region 26542	1128 bp upstream
Tssr26543	transcription start site region 26543	179 bp upstream