rs108199201 SNP Detail

Summary

• ID
  rs108199201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150652572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTTAGG TTGGGGATGA
  TAGAGCACAT GCTTAATAAT TACTTTTGAT TTGAATGGTG TTTCTCATAA TCTGTGAACG
  CATAGATTCT GAATTCATTG GCCTGCTCTA TCACATTATC CAGATGTTCC AGAGTCCGCC
  TTCTTCTCTC TTTTCTGGTG AATACATTGT ATGTTGCTGG GCACTAACCC TACATTTGAT
  R
  CCACAGTCTG GCACTCCACC CTCCAAACTA TCTCCTACCA ACCATCTCCC CTTCTCAAAG
  CTCCCTCTAA CCCTACAAAC ACTGCTCCTC CCATTGGTAA CCTGCCTTGG TGAGAAGATG
  TTCTGGCCTC CCTTGGTGCA CAGTTGCGAT GCCCCTTGCT GCTTTCAGGT AGTACCCTGG
  AGTGCTCTGT GATGACTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148054995	ENSMUSSNP181152	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108199201					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150652572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	939 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1633 bp downstream
Rr605335	regulatory region 605335	1480 bp distal
Rr605336	regulatory region 605336	79 bp proximal
Rr605337	regulatory region 605337	419 bp proximal
Tssr40415	transcription start site region 40415	1621 bp downstream
Tssr40416	transcription start site region 40416	1531 bp downstream
Tssr40417	transcription start site region 40417	701 bp upstream
Tssr40418	transcription start site region 40418	1102 bp upstream
Tssr40419	transcription start site region 40419	1134 bp upstream
Tssr40420	transcription start site region 40420	1369 bp upstream
Tssr40421	transcription start site region 40421	1423 bp upstream
Tssr44743	transcription start site region 44743	1239 bp upstream
Tssr44744	transcription start site region 44744	585 bp downstream
Tssr44745	transcription start site region 44745	1750 bp downstream
Tssr44746	transcription start site region 44746	1951 bp downstream
Tssr44747	transcription start site region 44747	1961 bp downstream
Tssr44748	transcription start site region 44748	1999 bp downstream