rs108190239 SNP Detail

Summary

• ID
  rs108190239
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121298406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAAACA AGTAGTTTAC
  CAACTGAGCT GTTACTGCTG TCCCTAAATA GAGCTTGACT TCTTCCCCAC CTCCTGCTAA
  TGGGATTTGA ACCCTGGATT TGGTACACAT GAGACAAGTT CTGTACTACT TACCCATATT
  CTCTGTACTT TTATTCATTA CTATCTTTTT TTTTTTTTTT GGTTTTTTTT TTTTTTTTGG
  W
  TTTTTCAAGA CAGGGTTTCT CTGTGTAGCC CTGCCTGTCC TCGAGCTCAC TTTGTAGACT
  AGGCTAGCCT TGAACTCAGA AATCTGCCTG GAAAGTGCTG GGATTAAAGG CTTGTGCCAC
  CACGTCTGGC TACTATCATT ATTTAAAACA ATCTTTAAAA TTTTCATGTG TTTTGCTGTC
  TTGACTATTA TATCTGTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MOLF/EiJ
ss355466950	MGP_WTSI_2_121293661	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	A	A	A	A	A	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MOLF/EiJ
rs108190239					SNP	A	T	A	A	A	A	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355466950	MGP_WTSI_2_121293661	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121298406 () rs orientation: forward

Symbol	Name	Function Class
Mfap1b	microfibrillar-associated protein 1B	Intron
Rr563829	regulatory region 563829	459 bp distal
Rr563830	regulatory region 563830	1237 bp proximal