rs108189849 SNP Detail

Summary

• ID
  rs108189849
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141170526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTAGCAG CCTCTTGCAA
  AGTAACTGCC CTCAATGGGA GGAGGGACAG CTACCTTCGA CTGACAAGGG GTCTCATTGA
  ATTTTAGATT TAGAGATTGA GGACACAAGA GATCCATCTG TTCCACTTAG CCATCTCTAT
  TTCCAGTTCC TAAGTATTAA TCTTTCCATT TCCACACCCC TGGCCAAGCT ATGAATATGA
  S
  CCATCTAGAA ATTACACCAT GAATCTTTAG TGTGCAGAGT CAGAGAGCTG CCTGTCTCTA
  GCCTCCAAGT GCTGGGATTA AGGTGTGCAT CACACTCAGC TAAGTCTTTG TTCTTTGAAG
  AGTTTTCAGT GAAATTATAA ATAACAGTTA ATATTCTGCA GTCCTGGCAT AGTAATTAAA
  TACAAACCCA CCCTGGCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737106	ENSMUSSNP1890274	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108189849					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141170526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	1266 bp proximal
Gm42337	predicted gene, 42337	771 bp downstream
Rr603767	regulatory region 603767	1987 bp distal
Rr603768	regulatory region 603768	981 bp proximal
Rr603769	regulatory region 603769	1450 bp proximal
Rr603770	regulatory region 603770	1890 bp proximal
Tssr40079	transcription start site region 40079	1442 bp upstream
Zbtb17	zinc finger and BTB domain containing 17	1458 bp upstream