rs108176359 SNP Detail

Summary

• ID
  rs108176359
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153565163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCCTCT GGCAGATTTT
  TAGGACAAGA GCAGAAAGCA GCCACATTCT TTGTCAAAAC AGCACAAGAA TGGTCTCTAG
  ACTAGTTGTT AATATTCTCC CCTTCTGAAA CTTCTTGAGC TAGGCCCACA TTGCTCTCAG
  CATTGCTGTC CATACTCCTA CTAGGGTGCC CCAATTTTAA ACTTTTGCAT TTAGGTGCTT
  W
  TCTACTCAAA GTTCAAAAGT GCACATTCTA TCAACAAGCA GCATGGTCAG GCCTGTCACA
  GTGATACCCA ACTCCTGATA CCAACTTCTG CCCCAGTCAC TGTTCTATTG CTGTAAACAT
  ACATCATCTC TGTTCCTGTA TCCTAGGAAA GCCTTGTCAC CCGACAGGTC TGACCTGGGC
  TGAGTGACAC CTCTGAGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148002175	ENSMUSSNP4096430	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320564608	CHEV_2_153548979	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108176359					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153565163 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	within coordinates
Rr567733	regulatory region 567733	1146 bp proximal