rs108173004 SNP Detail

Summary

• ID
  rs108173004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134999250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA CTCCTCAAGC CTCTACTGCT
  R
  GGTCATAGCC GAGTCACCAC GCCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147543268	ENSMUSSNP4830526	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321351516	CHEV_4_134827854	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108173004					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134999250 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	951 bp upstream
Rr601974	regulatory region 601974	1585 bp distal
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	261 bp distal
Rr601977	regulatory region 601977	215 bp distal
Rr601978	regulatory region 601978	510 bp proximal
Rr601979	regulatory region 601979	853 bp proximal
Rr601980	regulatory region 601980	865 bp proximal
Rr601981	regulatory region 601981	1169 bp proximal
Tssr39607	transcription start site region 39607	234 bp upstream
Tssr43972	transcription start site region 43972	771 bp upstream
Tssr43973	transcription start site region 43973	767 bp downstream
Tssr43974	transcription start site region 43974	795 bp downstream
Tssr43975	transcription start site region 43975	815 bp downstream
Tssr43976	transcription start site region 43976	842 bp downstream
Tssr43977	transcription start site region 43977	859 bp downstream