rs108172884 SNP Detail

Summary

• ID
  rs108172884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCACTGT GATTTTGTTT
  TTATCTTAAT TGTGAAGGAA GAGAGATGAG AAAGATGGGT GCTGGTGGCG ACAGGGGGGT
  GTTAATCAGG TGGTGGTCAG GGTTCTGAGG AAAGCAGCCC TCTTCTTCTT ATAGGTCTTT
  GTTTTCTTTT AAATATTTAA TTTTTGTGTG TACAAATGTA TGGAATTCAT ATATATGTGT
  R
  TATGTGTATA TAAGCATGCA TATGTGTGTG TATATATATA TATATACATT TATACTCAAA
  TGCATAGGTG TGTCTATATA CATATATGTA CATATATATA CATATACATG TATATATCAT
  ATGCATGCAG TGCCCTCAGA GGCCAGAAGG GGCGTCATAT CCCCTAGAAC TGGAGCTATA
  TCTGGTTTTA AACCACCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132872508	ENSMUSSNP1198588	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108172884					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr459796	regulatory region 459796			1672 bp distal
Rr459797	regulatory region 459797			1337 bp distal
Rr459798	regulatory region 459798			913 bp distal
Rr459799	regulatory region 459799			321 bp distal
Tmem104	transmembrane protein 104			Intron
				Noncoding-Transcript-Variant
Tssr3729	transcription start site region 3729			1267 bp upstream
Tssr3730	transcription start site region 3730			320 bp downstream
Tssr111736	transcription start site region 111736			1173 bp upstream