rs108172640 SNP Detail

Summary

• ID
  rs108172640
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127674032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGTGAGTC CTATGCTAGG TGCTGACTGA GCTAAGGTTT
  GTTTCCATTC TAGTGAGACA CTAGCCATGT TTTGGCATAG AGTTATTATT ATTACTTTTT
  W
  AAAAACGGTA TAAATGGCAA CTGGCTTACA GTATTACACT ACCAGGCCGA ACGTGACGAT
  TCTGTGACTG AAACCCCTTT GAGTCCTCTT GGGTCTTGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147542393	ENSMUSSNP4810500	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108172640					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127674032 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	247 bp upstream
Cpgi12232	CpG island 12232	36 bp distal
Rr397289	regulatory region 397289	36 bp downstream
Rr564601	regulatory region 564601	264 bp distal
Rr564602	regulatory region 564602	within coordinates
Rr564603	regulatory region 564603	858 bp proximal
Tssr26147	transcription start site region 26147	237 bp upstream