rs108172501 SNP Detail

Summary

• ID
  rs108172501
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150652919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGCCCCT TGCTGCTTTC
  AGGTAGTACC CTGGAGTGCT CTGTGATGAC TGTATGCACT TACTTTACCT GCAAAAAGCT
  AGTCACAGTT TAAGCATATC CTGTCAAGGT TTTTCAAAGT CCCTCCCAGT GCTAGATGTA
  CAGTAACTCA CCAGAGTGAA TTCAGGGCCT CCTCTCCTAC AGTGCTGTGC CACCAGCCTC
  K
  GCTGCTCTCT TCGTACTCCA CAACTTGGGC CTCCCCAGGG AACGCTCCAC CTTCAACCCC
  TGGTCGACCA TTGGATCTTA ACTCCTCAAA GCTCAGTGCA GCCTGATCCT CACTGCCCTC
  TAAAAGTCAT CTACAAGCAG TCAGTTTTTC TTTCTGCATA CCTTGTCCTC CTTGGAGTTT
  CCAGAATGTT CCTATGTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148055015	ENSMUSSNP357937	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108172501					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150652919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	592 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1980 bp downstream
Rr605335	regulatory region 605335	1827 bp distal
Rr605336	regulatory region 605336	within coordinates
Rr605337	regulatory region 605337	72 bp proximal
Rr605338	regulatory region 605338	1773 bp proximal
Tssr40415	transcription start site region 40415	1968 bp downstream
Tssr40416	transcription start site region 40416	1878 bp downstream
Tssr40417	transcription start site region 40417	354 bp upstream
Tssr40418	transcription start site region 40418	755 bp upstream
Tssr40419	transcription start site region 40419	787 bp upstream
Tssr40420	transcription start site region 40420	1022 bp upstream
Tssr40421	transcription start site region 40421	1076 bp upstream
Tssr40422	transcription start site region 40422	1738 bp upstream
Tssr44743	transcription start site region 44743	1586 bp upstream
Tssr44744	transcription start site region 44744	238 bp downstream
Tssr44745	transcription start site region 44745	1403 bp downstream
Tssr44746	transcription start site region 44746	1604 bp downstream
Tssr44747	transcription start site region 44747	1614 bp downstream
Tssr44748	transcription start site region 44748	1652 bp downstream
Tssr44749	transcription start site region 44749	1803 bp downstream