rs108169988 SNP Detail

Summary

• ID
  rs108169988
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:92758405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT AAAGGGAACA GCAGGAGGGA
  T
  AGTGCTGCCC GGCAGCAGCT AAGCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144956117	ENSMUSSNP237021	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108169988					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:92758405 () rs orientation: forward

Symbol	Name	Function Class
Gm29481	predicted gene 29481	within coordinates
Gm69848	predicted gene, 69848	within coordinates
Gpc1	glypican 1	962 bp upstream
Rr415863	regulatory region 415863	472 bp proximal
Tssr8123	transcription start site region 8123	651 bp upstream
Tssr8124	transcription start site region 8124	810 bp upstream
Tssr8125	transcription start site region 8125	931 bp upstream
Tssr8126	transcription start site region 8126	967 bp upstream
Tssr8127	transcription start site region 8127	1047 bp upstream
Tssr8128	transcription start site region 8128	1085 bp upstream
Tssr8129	transcription start site region 8129	1109 bp upstream
Tssr8130	transcription start site region 8130	1136 bp upstream