rs108167588 SNP Detail

Summary

• ID
  rs108167588
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115994092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTCT CTTTTTTTTT
  TTTTTTGTTT TTGTTTTTTT GAGACAGGGT TTCTCTTTAT AGCCCTGGCT GTCCTGAACT
  CACTCTGTAG ACCAGGCTGG CCTTGAACTC AGAAATCTGC CTGCCTCTGC CTCCCAAATG
  CTGAGATTAA AGGCATGTGC CACCACGCCC GGCCTTCTGG CTGGTTTTTT AAGTCATTTA
  T
  TTTTGAGATA GGGTCTCATT ATGCAGATCA GGTTGGCCTC AAACTCTGAG CTCCATCTGC
  TTCTGCCCCA CACCCTCTAG TGCTGGGGTT AGAGTATGCT ACTACATCTG GCCTGCTAAA
  GATTTTTAGT GGATGGTAAT TAACCAGATT TTGAAATTGT TAGCCCCTTT GCCCTATGCA
  ATCCTAGAGT GTGATGTGCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss133574521	ENSMUSSNP4545085	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108167588					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115994092 () rs orientation: forward

Symbol	Name	Function Class
Rr637138	regulatory region 637138	652 bp proximal
Rr637139	regulatory region 637139	930 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	1480 bp downstream