rs108158323 SNP Detail

Summary

• ID
  rs108158323
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119632892 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T ATGTCAGCTG GGCATGGTGG TGCATGCCTT TAATCCCAGC
  AATGGGGAGG CAGAGGCAGG CAGATTTCTG AGTTCGTGGC CAGCCTGGTC TACAGAGTGA
  A
  TTCCAGAACA GCCAGGACTA CACAGAGAAA CCCTGTCTCA AAAAAAAAAA AAAAAAAAAA
  TGAGATGTCA AGAAAACAAT CCAATTTTTA AATTTAGGTA C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144962456	ENSMUSSNP1882958	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108158323					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119632892 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			Intron
				Noncoding-Transcript-Variant
Gm67959	predicted gene, 67959			within coordinates
Rr637722	regulatory region 637722			799 bp distal
Rr637723	regulatory region 637723			1945 bp proximal