rs108155891 SNP Detail

Summary

• ID
  rs108155891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGACGG AAGGAAGGAA GGAAGGAAGG
  AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA GGAAAAGGAG AAAACACACT TCCTGGGATG
  GGATGAGACC AATCTGCAGA GTTCTTACTC TGCAAGCATG GGGCCCTGAG GTCAATCCCC
  Y
  GGAACCCAGC TTTAAAAGGG AAAGGTGATT CAGTGGTTAA GAGCACTGGC TGCTCTTCCA
  CAGGACCCAG GTTCAATTCC CAGCACCCAC ATAGCTGCTT GCAATTGCCT GAAACCCCAG
  ACCCAGGAGA TCCGAAGCCT CTTCTGATCA TTGAGGGCAC CAGGCACACA TGTGGTGTGC
  ATACACACAT GCAGGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147553092	ENSMUSSNP5281926	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108155891					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621485 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	1220 bp upstream
Rr602181	regulatory region 602181	1025 bp distal
Rr602182	regulatory region 602182	709 bp distal
Rr602183	regulatory region 602183	817 bp proximal
Rr602184	regulatory region 602184	1231 bp proximal
Rr602185	regulatory region 602185	1797 bp proximal
Tssr39650	transcription start site region 39650	1006 bp upstream
Tssr39651	transcription start site region 39651	1210 bp upstream
Tssr39652	transcription start site region 39652	1240 bp upstream