rs108152033 SNP Detail

Summary

• ID
  rs108152033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150270471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT CATTCTCTGG GCTCGAAACA
  Y
  GCTTAAGCGT GTAGATAAGA TGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148049587	ENSMUSSNP4892000	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321428588	CHEV_4_149560123	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108152033					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150270471 () rs orientation: forward

Symbol	Name	Function Class
Car6	carbonic anhydrase 6	1001 bp downstream
Rr605217	regulatory region 605217	499 bp proximal
Rr605218	regulatory region 605218	706 bp proximal
Tssr40380	transcription start site region 40380	1402 bp upstream
Tssr40381	transcription start site region 40381	1411 bp upstream
Tssr40382	transcription start site region 40382	1429 bp upstream
Tssr40383	transcription start site region 40383	1443 bp upstream
Tssr44720	transcription start site region 44720	1376 bp downstream