rs108141401 SNP Detail

Summary

• ID
  rs108141401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGCAATTA TATTACAATA TGAAAAAATT AAATAAATAA
  TATATACGGT TATGTAGCTT AGTCATAGAT ACTTACCTAG CATGCATGGG ACTCACGGTT
  Y
  CATCTTCAGT GCCAGTTTTC TAAAAAGTAG AATTCCTCCT GACAGTTACA GAACTGTATT
  TTTTTTTTAA TTAAAGAAGA GAAAATATAA GGAAAAGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss135359190	ENSMUSSNP5234413	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320807533	CHEV_3_78398128	CHEVERUD	SCREENING_POP	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs108141401					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501513 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	311 bp proximal
Rr578424	regulatory region 578424	730 bp proximal
Tssr33603	transcription start site region 33603	133 bp downstream
Tssr33604	transcription start site region 33604	203 bp downstream
Tssr33605	transcription start site region 33605	216 bp downstream
Tssr33606	transcription start site region 33606	231 bp downstream
Tssr33607	transcription start site region 33607	307 bp downstream
Tssr33608	transcription start site region 33608	365 bp downstream