rs108131361 SNP Detail

Summary

• ID
  rs108131361
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31902200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTACCCA GGATTCCAGG TGACTTCATG TCACCACAGC
  TACTAGGGGA CCAAGGTGCA CAAGACCCTG TGCAGGCCCA GAGAAGGTCA TCCTAAAGCA
  K
  CTCTGGGGGT CAGTGATGTG TTTATAAAAA GAGAAAGAGA GAGGGGATAT GTTTGGTGGG
  TATGCAGTCA GGTGTGGGGG AAGGAGGTGC CTCCGTGGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325359879	CHEV_17_31820171	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108131361					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31902200 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	1496 bp downstream
Gm50222	predicted gene, 50222	within coordinates
Tssr5085	transcription start site region 5085	1940 bp downstream
Tssr5086	transcription start site region 5086	1835 bp downstream
Tssr143688	transcription start site region 143688	1927 bp downstream
Tssr143689	transcription start site region 143689	1895 bp downstream
Tssr143690	transcription start site region 143690	1714 bp downstream
Tssr143691	transcription start site region 143691	1611 bp downstream
Tssr143692	transcription start site region 143692	1549 bp downstream
Tssr143693	transcription start site region 143693	1527 bp downstream
Tssr147309	transcription start site region 147309	1932 bp upstream
Tssr147310	transcription start site region 147310	1689 bp upstream
Tssr147311	transcription start site region 147311	1623 bp upstream
Tssr147312	transcription start site region 147312	1502 bp upstream
Tssr147313	transcription start site region 147313	1081 bp downstream