rs108130486 SNP Detail

Summary

• ID
  rs108130486
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87662843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTGTAATG AGATCTGATG CCTTCTTTTG GTGTGTCTAA
  AGATGGCTGC AGTGTTCTTG TATACATAAA ATAATTCTGG AGAGAGAGAG AGAGGGAGAG
  A
  GAGAGAGAGA GAGGTATTCT GTATGATCCC AGCACCCCAG AGGTTATGGA AGCTCAGAAA
  CATAGTAGGT TCTCAGACTT TGAGTCTATC CTGAGCTAT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135468104	ENSMUSSNP5391971	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs108130486					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87662843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13335	CpG island 13335	327 bp proximal
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	584 bp proximal