rs108129237 SNP Detail

Summary

• ID
  rs108129237
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115808874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCAGATGAAC GCCCTTTCCT GAGCATCTGT GTTCTCTGAC
  CAAGCAAGTC CCAGTTCTGG TGTTGAAAGC AGAAAAGCTG CCTGTGTGGC TTGGGCTTGA
  G
  GTCCCATTTA TGACTCTTTT GTCCCATCAT CTAACGGTGA CCGCCCAGGT CTTTTACGTA
  AGGAAACATT TCTTGAGTGC CCTGTTGATG AGACCTAATT T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135668030	ENSMUSSNP5485601	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108129237					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115808874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Extl2	exostosin-like glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr583640	regulatory region 583640			812 bp proximal