rs108128771 SNP Detail

Summary

• ID
  rs108128771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65300611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTCTGGGTCC CAGAGATTGA ACCAAATTGT CACGTTTGTG
  TCTTTACCCT CTGAGCCATC TGCATGGTTT AATTTATTAT TATTATTATT ATTATTATTA
  Y
  TATTATTATT ATTACTATTA CATCATTTTA ATCAACAAAG CCTCTTAGCC TCTAAAAGAC
  TCTCTCATTA CAGTCTTTAG AATTGGAAAA TAAAAAAACT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135250852	ENSMUSSNP3735653	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108128771					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65300611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13227	CpG island 13227	264 bp distal
Cpgi13228	CpG island 13228	110 bp proximal
Cpgi13229	CpG island 13229	1610 bp proximal
Gm5540	predicted pseudogene 5540	147 bp upstream
Rr397698	regulatory region 397698	371 bp downstream
Rr577676	regulatory region 577676	711 bp distal
Rr577677	regulatory region 577677	77 bp distal
Ssr3	signal sequence receptor, gamma	637 bp upstream
Tssr33464	transcription start site region 33464	628 bp upstream
Tssr33465	transcription start site region 33465	595 bp upstream