rs108125598 SNP Detail

Summary

• ID
  rs108125598
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97979386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTGTGTGTTT GTGTGTGTGT GTATGTTTGT GTGTATATGT
  GTGTGTGTGT ATGTTTGTGT GTATGTGTGT GTGTGTATGT TTGTGTGTAT ATGTGTGTGT
  G
  TGTTTGTGTG TGTGTGTGTG TGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAAATAGAG AGGGGGGTTA GAATTATCAT C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147085126	ENSMUSSNP4250163	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs108125598					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97979386 () rs orientation: forward

Symbol	Name	Function Class
Nfia	nuclear factor I/A	Intron
Rr367651	regulatory region 367651	249 bp upstream
Rr595683	regulatory region 595683	757 bp distal
Rr595684	regulatory region 595684	83 bp proximal
Rr595685	regulatory region 595685	238 bp proximal