rs108125012 SNP Detail

Summary

• ID
  rs108125012
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:149839812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTGTGTAATC CTGGCTGGCT TGGAACTAGT TATAGTTGGA
  GACCAGGCTG GCCTCCAACT TACAGAGAGC CACCTGCCTC TGCCTCTGCC TCTCTGAGTG
  C
  TGGGATCAAA GCCCTGTGCC ACCACACATG TACCTATTTC TTTGTGTACA AATGGCACCA
  ATAACTCACA TAGCATGCCA CAGGAAAGTG CCAACACAAT G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134502949	ENSMUSSNP5681795	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108125012					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149839812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
DXMit153	DNA segment, Chr X, Massachusetts Institute of Technology 153			815 bp distal
Fgd1	FYVE, RhoGEF and PH domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr694364	regulatory region 694364			1900 bp distal
Rr694365	regulatory region 694365			906 bp distal