rs108122538 SNP Detail

Summary

• ID
  rs108122538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150276718 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T AGTCAGGGTT ACTATTGCTG TGATGAGACA CCATGACCAA
  AGAAGGTTCG GGAGGAAAGG GTTTATTTTG GCTTATACTT CCATAGCACT GTTGGTCATC
  R
  AATGAAGTCA GGACAGGGAC TCAAACAGGG CAGGAACCTG GAGGCAGGAG CTGATGCAGA
  GACCATGGAG GGGTGCTGCT TACTGGCTTG CTCCCCAGGG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149011216	ENSMUSSNP3048368	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108122538					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150276718 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			1761 bp proximal
Rr605220	regulatory region 605220			1851 bp proximal
Tssr44724	transcription start site region 44724			250 bp downstream
Tssr44725	transcription start site region 44725			277 bp downstream
Tssr44726	transcription start site region 44726			312 bp downstream
Tssr44727	transcription start site region 44727			368 bp downstream
Tssr44728	transcription start site region 44728			1497 bp downstream