rs108122172 SNP Detail

Summary

• ID
  rs108122172
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116946402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAACAGG ATCCTGCTGA
  ACTCCATCTA TTCTGGACTC TGCTTCCTCT TTTCAGTCTG GTGTGCATCG ATGCCTAAGA
  GGGAGGAAGT GGAGGACATG GAACCACAGC GGACCCCAAA ATGGATATCA TATACTCCAT
  GCAAGCAACA TCTTTGTTGA TTCTGCTTAT TAGTTTCTTC CCAAGAGCAA ATCTAGTATC
  T
  GACATACAAG TTGTCTTCGG TAAATAGTCG TCATTCCGTT TGAATGGCGT ATATCATAAA
  ATCCTGTACA GTCTCTGGGT AAAACACAGA TAATCACCAT TACACGGGTT TAAAGGCCTA
  AAACAAAAGT TATCCCATTT CTGCCTGAGC CATTCAGTAT TGTGTGCTTA TGACCACCCT
  TTTCCGACCA CTCCTAAACC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss135685012	ENSMUSSNP7141605	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108122172					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116946402 () rs orientation: forward

Symbol	Name	Function Class
Rr583834	regulatory region 583834	261 bp proximal
Rr583835	regulatory region 583835	359 bp proximal