rs108117287 SNP Detail

Summary

• ID
  rs108117287
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133455467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCAGTTT CAGTGACAGA
  GAGAACCTAG AAAGCATGGT ACACTGCGTG CAGGCTCTTA AAGCTTCCAC ATGAGCCACG
  TCACTTCCAC CCACATTTTA CTGGCCAAAG CGGTTACTTA TCTCAAATCG TCAAGGAAGT
  ATAATTCTTG AGTGTGGCTG GAAAGGGAAA GGGGTAGATT GGGACAACCT GACCAATGTG
  G
  CAAACTGTTG AAGTAGGAGT GTGTGTTTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTAGTG CTTGTATCCA GAAAAAAAGT CCATTATTAT TTTAATCCAA TTCTCAAGGG
  ATCCGTGATA ACAATTAGCA ACTCTTGGAC CAGTTGAGAA CTGTCGTGTG AATAGATAAT
  TATTTTTACA AGGCAATTTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135918898	ENSMUSSNP459135	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108117287					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133455467 () rs orientation: forward

Symbol	Name	Function Class
Gm64379	predicted gene, 64379	152 bp upstream
Rr398038	regulatory region 398038	249 bp downstream
Rr585594	regulatory region 585594	179 bp distal
Rr585595	regulatory region 585595	78 bp distal
Rr585596	regulatory region 585596	1391 bp proximal
Tssr35771	transcription start site region 35771	165 bp upstream