rs108112296 SNP Detail

Summary

• ID
  rs108112296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20562272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCTCAG CCATTCAGTA
  TTCCTCAGTT GAGAATTCTT TGTTTAGCTC CCTACCCCAT TTTTAATAGG GTTCTGGTTA
  CTGAGTGCAT ACTATGTAGC AGGCTCAGTA GCAAGTGCGG AGGATACAAC ATCAAGAGAG
  CCTTGCCCTC TTGGGAAGAA CAGCCATTTG GAAGGCCAGG GCTGCAAAAG CCTGCCTCTG
  R
  GATTGTAATC TCTGGGTGCC CTTTCCCAGC CTCTTGGCCT GGCACCTCAG AAGAGTGATT
  TCTCTTGTGG ACTTAAGGGC CTTCACTCAA GGAACAACCC TATCATGGGG TGGGGGGGGG
  GGGGGCGGGT GCGCTGTGTG TGCAGAGCTT ACTGTATGTG TGCAGAGACA AACAGCAGCA
  GAATGCCAAA AGGCTTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134672216	ENSMUSSNP1132109	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108112296					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20562272 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1902 bp upstream
Rr574081	regulatory region 574081	1151 bp proximal
Rr574082	regulatory region 574082	1280 bp proximal
Tssr32748	transcription start site region 32748	1898 bp upstream
Tssr32749	transcription start site region 32749	1883 bp upstream