rs108107139 SNP Detail

Summary

• ID
  rs108107139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153567722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGATAGC GTCAGTGAGC
  TGTGCTGGGT GACAGAGTGG ATGTATGAAG TGTCAGTTGG ACTGAGGCCT GGATCATCCA
  GTTTGTGCAG ATCTTTTCAC TCTATAGCCC TGGCTGGCCT GGGACTCCTT ATGTAGGCCA
  AGCTGGCCTT GAACTCACAA AGATCCTCCT GCCTCTGCCT CCTTCGTGCA GGGATTAAAT
  R
  CATTCACCAT GCTCAGTGTT TGTATGAATC TTGGTCTTTG ACTCTATTTA CATAACATGG
  AGCTTTCCAT GTCCCTTTCT CCTGACCCCT TAACTCATTT AGGTCCACAG AAGACACAAA
  AGGGGGCAGG GAGCCAGTGA GACGGCTTAG TGGGTAAAGG AGCTTGCTGT ACAAGCCTGC
  TGGCCTGAGC TTGATCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148002262	ENSMUSSNP2010120	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320564632	CHEV_2_153551538	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108107139					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153567722 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	290 bp downstream
Rr567733	regulatory region 567733	974 bp distal