rs108106696 SNP Detail

Summary

• ID
  rs108106696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121162917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGTTGG CATAATACTT
  TGATTAGTTG TCTGCTCAGA GTCTCACAAG GGTAAACTCA AAGTGACAGC TGACCCTGGC
  TCTTTCTTCA AGCTCATACA GGTCATTGCT GGCAGAATTT AGTCCTCGTA GTTGCAAGGC
  TCCCATTAAC TGCTCTTCCC CGCTTCCACC CCCCCCCTTT TTTTTTTTAA TTTTGTTTTG
  R
  AAAAAAAAAA TGTCTTTATC TTCTCAAGTC AAACCTGGTA GTCCCTGCCT ACGGTTCCAA
  CATCTGTGAG CCTGTGAAGT GAAAATGGGG AAACGAAGGG AGAAGTTTTC AGATCGAAGC
  CCATACTTGG CCAAGGGTCT GATCCTAGAA GAAATGACAA TCCCAGACCT CAAATGCAGC
  TTCTTAGAAA AAAAAAAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135719320	ENSMUSSNP1802311	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108106696					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121162917 () rs orientation: forward

Symbol	Name	Function Class
Gm33363	predicted gene, 33363	within coordinates
Rr397973	regulatory region 397973	201 bp upstream
Rr397974	regulatory region 397974	921 bp upstream
Rr584057	regulatory region 584057	within coordinates
Rr584058	regulatory region 584058	352 bp proximal
Rr584059	regulatory region 584059	940 bp proximal
Tssr31438	transcription start site region 31438	314 bp upstream
Tssr31439	transcription start site region 31439	379 bp upstream