rs108105658 SNP Detail

Summary

• ID
  rs108105658
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84218947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTTGG TTTTTCAAGA CAGGGTTTCT CTGTGTAGCC
  CCGGCTATCC TGAAACTCAC ACTGTAGACC AGGCTGGCCT TGAACTCAGA AATTCGCCAG
  C
  CTCTGCCTCC CAAGTGCTGG GATTAAAGGC GTGCGCCACC ACCGCCCGGC ATGTATGAAT
  ATTTAACCGA ACAAACTGTC TCGGCCTTTC GTAAAGTAA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146830368	ENSMUSSNP3592030	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs108105658					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84218947 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560245	regulatory region 560245			1027 bp distal
Rr560246	regulatory region 560246			691 bp distal
Rr560247	regulatory region 560247			211 bp distal
Tssr24971	transcription start site region 24971			1411 bp upstream
Tssr24972	transcription start site region 24972			1095 bp downstream
Tssr24973	transcription start site region 24973			1152 bp downstream
Tssr24974	transcription start site region 24974			1193 bp downstream