rs108096404 SNP Detail

Summary

• ID
  rs108096404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACCC
  AACACAGCAT GGCACAAACT TCCCACCGCA AACTAATCTT AATAATTTAT AATAATATAT
  ACATTTGTTA CAATGTTTTA CTAAAAACTC TCTAAGTACT TCAGGCAAGC CCAAATTATT
  TGCCTTTTAA AGAAGACTAA AACTCTAGGC CTATAATAAA AACTAGAGTG CATCCTTAGG
  Y
  CAGACCAAGC CTTACAGGCT ATGCTGACAC GAGTAAGATT AGCTGTGCTC TGTTCAGCCA
  AAAGGGGGAG CCATGTCGCC TCTGAGGACC AGCGTTCAGT TTGACAGTCA GCCAGAAACA
  GATTCTTCCC AACAAGAAAG GCTTCTTGGT GTATTAAAAG GTTGCATACG AGGAACGGCA
  GTACGGCTGA GGCTATGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135873122	ENSMUSSNP6075589	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320957507	CHEV_3_127556376	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108096404					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647107 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	1448 bp distal
Rr584884	regulatory region 584884	159 bp distal
Rr584885	regulatory region 584885	within coordinates
Rr584886	regulatory region 584886	54 bp proximal