rs108089697 SNP Detail

Summary

• ID
  rs108089697
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTATTAT TAACTATATA
  TAACAATCAC TAATCATTAG CTCCTTTGAG CAGATCTCTG TGGATCAATG AAGATGTACA
  GTCTTGTAGT GATGCTATAT AGACAAATAG GCGAATTCTT AATTCTTAAC AATGATTCAT
  TAAGAGTTCC TAAAATTATA TTAGGAATTA TTAAGACTTT TATAATAGGA CTGCTATTAA
  A
  TGTTTACTGA TATCAAAACT GCAATGAGAA TTCTGACAGT CTTCAGTGTC ATGAGTTAAT
  TGCTTCTGGA ATAGCAAGCA GGCATCTACT ATTCAGCACT TTTCAAGAGG TTGAAAAACC
  ATTAATCACA GGTCATAAAT AGGGAACTAA GGATTTATAT TGATGCAAGA CAGAAGATAA
  AATGTTGACT GGGCTTATCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146960040	ENSMUSSNP2536503	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108089697					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033354 () rs orientation: forward

Symbol	Name	Function Class
Raet1a	retinoic acid early transcript 1, alpha	1154 bp upstream
Raet1e	retinoic acid early transcript 1E	1087 bp upstream
Rr384270	regulatory region 384270	1878 bp upstream
Rr428833	regulatory region 428833	624 bp proximal
Rr428834	regulatory region 428834	1142 bp proximal
Tssr92677	transcription start site region 92677	940 bp upstream
Tssr92678	transcription start site region 92678	1014 bp upstream
Tssr92679	transcription start site region 92679	1066 bp upstream
Tssr92680	transcription start site region 92680	1111 bp upstream