rs108085905 SNP Detail

Summary

• ID
  rs108085905
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGCCTT GAAGATAATG
  GACTGAACCT CTGAACCTAT AAGCCAGCCT CAATTAAATG TTCTCCTTAT AAGACTCGCT
  TTGGTCACGG TATCTACTCG TAGCAGTCAA ACCCTAACTA AGACGGTGCT CACAGTTGCA
  AAGCAGGCAA CAGAGTTATC TCCTCAGCCC TGAAGTGTCT ACTTAAAAAA TTTTAAAGTT
  W
  CATTTATTTA TTTATTTTTG TGTATGTTTG TGTATGTTTG TGTACGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTAGG TCAAGGGACA ACGTACTGGA GTTGGTTCTC
  TCCTTCTACC ATGTGAGGTC TTGGTATCAA CCCCAGGCCA TTAGGCTTGG TGGCAGGTAC
  CTTTACCTAC TGAGCCACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136042054	ENSMUSSNP4338267	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108085905					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			1427 bp upstream
Rr586924	regulatory region 586924			581 bp proximal
Rr586925	regulatory region 586925			1556 bp proximal
Tssr36027	transcription start site region 36027			1425 bp downstream
Tssr36028	transcription start site region 36028			1445 bp downstream
Tssr36029	transcription start site region 36029			1483 bp downstream