rs108081675 SNP Detail

Summary

• ID
  rs108081675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58490162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGATTTAT GTTTCTATAT
  ATTTCAAAAC AACGCTAAAA CAAAATGTTC CTATAGCTTA ACGAGATTTT GGAATCTCGT
  GGGTAAAAGG TTCCAGAAAC ATAAAGTAAA ACAAAGTTCA GCAAATGGTT AAGGTGGAGA
  GAACAAGTCC GATAGAGTTC CTCTGTGCTT CTGCTGTGAG ATCCTTGGGA CGGTGGTTCT
  Y
  AACATGTGAT ACCCCTGTGG GATCTGCAGA CCCTTCCACA GGGGTCACAA GTCACAGCTT
  TACATTTTGA TGCACAGCAC TAGCAAAATT ACAGGTATGA AGCCGCAACA AAAGAAACTT
  TATGGTTGGG GGTCAGCACA ACATGAAGAA CTGTATTAAA GGGTCAGAGA ACTAGGAAGG
  TTGAGACTCG CTGCTTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146392611	ENSMUSSNP2023636	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108081675					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58490162 () rs orientation: forward

Symbol	Name	Function Class
Lpar1	lysophosphatidic acid receptor 1	Intron
Rr592898	regulatory region 592898	294 bp proximal