rs108060434 SNP Detail

Summary

• ID
  rs108060434
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83809669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGGGAGGTCC CCTTGTGGGT GCTGCCATCT CTGGGCTGGT
  AGTCTTGGTT CTATAAGAGA GCAGGCTGAG CAAGCCAAGG GAAACAAGAC AGTAAAGAAC
  G
  TCCCTCCATG GCCTCTGCAT CAGCTCCTGC TTTCTGACCT GCTTGAGTTC CAGTCCTGAC
  TTTCTTGGTG ATGAACAGCA ATGTGGAAGT GTAAGCTGAA T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144767168	ENSMUSSNP6269153	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108060434					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83809669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17619	CpG island 17619	709 bp distal
Gm68055	predicted gene, 68055	within coordinates
Paip2b	poly(A) binding protein interacting protein 2B	946 bp upstream
Rr399726	regulatory region 399726	666 bp downstream
Rr632951	regulatory region 632951	1404 bp distal
Rr632952	regulatory region 632952	957 bp distal
Rr632953	regulatory region 632953	1243 bp distal
Rr632954	regulatory region 632954	456 bp distal
Rr632955	regulatory region 632955	915 bp distal
Tssr61712	transcription start site region 61712	985 bp upstream
Tssr61713	transcription start site region 61713	967 bp upstream
Tssr61714	transcription start site region 61714	937 bp upstream