rs108052893 SNP Detail

Summary

• ID
  rs108052893
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGCGCGC GAAGAGCTCC GAGAACTCCG CAGCCAAGGG
  AACTGGCGGC CCCCACGCGT GACCACAACT CCGGGCCGGG GAATCCGTGG GGCCCTGCGC
  S
  GGGCCGGACA GGTGGCGCCG TGAGAGCCGT CCCGAGCGGT GGCGTGAGGA CGCCACGCGG
  GCCTGCCGGA CCATACGGAG ACCGAGGCTA GGCAGCGGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147670557	ENSMUSSNP5924151	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108052893					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908541 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12337	CpG island 12337			within coordinates
Rr397340	regulatory region 397340			45 bp upstream
Rr566073	regulatory region 566073			within coordinates
Rr566074	regulatory region 566074			765 bp distal
Rr566075	regulatory region 566075			156 bp distal
Rr566076	regulatory region 566076			129 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			774 bp upstream
Tssr26543	transcription start site region 26543			40 bp downstream