rs108049589 SNP Detail

Summary

• ID
  rs108049589
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150173143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA AGCTTTTCAC GACATTTATA
  A
  ACTTCAGGCC CCCATTACCT GCACT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148046936	ENSMUSSNP4032023	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108049589					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150173143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	185 bp distal
Gpr157	G protein-coupled receptor 157	Intron
Rr398878	regulatory region 398878	1254 bp downstream
Rr605172	regulatory region 605172	1311 bp distal
Rr605173	regulatory region 605173	952 bp distal
Rr605174	regulatory region 605174	616 bp distal
Rr605175	regulatory region 605175	371 bp proximal
Tssr40369	transcription start site region 40369	1145 bp downstream
Tssr40370	transcription start site region 40370	1017 bp downstream