rs108044494 SNP Detail

Summary

• ID
  rs108044494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153348117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAACGTGG CGAGAGCCGT
  GGAAGCATAT AAAATATTGC ATATCGATTA AATATAAGAC AAGGGATGTC TTAATAATCC
  CCATGTGATT AAAAGACAAG AACAGACTCC ATTCTCTGGC TCTATTACAT TTCAGTGATG
  TAACAGGAAT GAGACAGTTT ACATCTGGAA GCCCTTACCA TATCAATGAT CAATCAGAAA
  Y
  CCTGACTCCA CAAACAGGTA GGCAGCCCAC ACTCTTCTAC CAGTGAAACG GAAACAACCA
  AAGCTTTCTT TCCCAAACAG GATTGGGGTC AGCTCCTGAA TTCTACTTCT ATTCCAGCCA
  TAGGCCTGGA TAAAGTCAGT CCTAAATCAG TCAACACTAA CAATAGTAGC AATAACAATA
  GCTATTGTAC CTGTATGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136110323	ENSMUSSNP5800586	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108044494					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153348117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587714	regulatory region 587714			1348 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant