rs108043012 SNP Detail

Summary

• ID
  rs108043012
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127967930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAACACG CCGGGGTGGG
  CGGCGCACGC AAACTGCAGG ACAGCCGGCG GGGCCACCCT CCCCACTACC TGTCGCAGCC
  TGCACGCGCC AGCGGCCTGG GGGCCGTGGG GGGTGGGGCT TACCTTCCGG CTTGCCGGGG
  GCCGGACTAA ACGGGGGCGG AGCCCGCGGT GATTGGGCGC GGGGGCGGGG GCTCAACTAC
  M
  GCAGAGTCTC AAGAGCAGGC TGCTTTCACT TCGCTCCCCG CAGGCACTGG GTCACCAGCT
  GGTTGGAGCT CTGCGGTCCT TGCCATCGTC GCCGTCACCG GATTCCTGCA GCCGCTCTGC
  GAGCTGTGTT CCACTTGGAT TCACACCACC TCCGCTGCTC CCGCCGCCAC CGCCTCGGCG
  CCCTTCCCCT GGCCCTCGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147552363	ENSMUSSNP1911205	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320501537	CHEV_2_127951746	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108043012					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127967930 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	28 bp upstream
Cpgi12235	CpG island 12235	within coordinates
Gm74510	predicted gene, 74510	207 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Gm75596	predicted gene, 75596	1875 bp downstream
Rr397296	regulatory region 397296	1323 bp upstream
Rr564648	regulatory region 564648	1463 bp distal
Rr564651	regulatory region 564651	within coordinates
Rr564652	regulatory region 564652	143 bp proximal
Rr564653	regulatory region 564653	218 bp proximal
Tssr20042	transcription start site region 20042	20 bp upstream
Tssr20043	transcription start site region 20043	1548 bp upstream
Tssr20044	transcription start site region 20044	1577 bp upstream
Tssr26150	transcription start site region 26150	1390 bp downstream