rs108032071 SNP Detail

Summary

• ID
  rs108032071
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194858607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGATGAATTC CCTGGAGACT GGAATCCAGG GAGAAGAGAG
  CAGACCCCCC CCACACACAA AAAACAACAA CAACAACAAC AACAACAACA ACAACAACAA
  M
  AACAAAAACA ATGCAGCAGT CACATTCCAA AGCGACCATA AGTGTCTCAG CCTTCTATGG
  TGATAATCCA TCTCCCAGAA GAGGTGGGGA CGTTCTGCAT C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss146544333	ENSMUSSNP615220	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs108032071					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194858607 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cr2	complement receptor 2			Intron
				Noncoding-Transcript-Variant
Rr426767	regulatory region 426767			301 bp proximal
Rr426768	regulatory region 426768			455 bp proximal
Rr426769	regulatory region 426769			573 bp proximal
Tssr384	transcription start site region 384			360 bp downstream
Tssr385	transcription start site region 385			388 bp downstream
Tssr15875	transcription start site region 15875			338 bp downstream
Tssr15876	transcription start site region 15876			408 bp downstream
Tssr15877	transcription start site region 15877			473 bp downstream