rs108028444 SNP Detail

Summary

• ID
  rs108028444
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50578570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGATGG CTATTGCTGG
  GCAGTGGTGG TTCACGCCTT TAATCCCAGC ACTTGGGAGG CAGAGGCAGG TGGATTTCTG
  AGTTCGAGGC CAGCCTGATC TACAGAGTGA GTTCCAGGAG AGTCAGGGCT ACACAGAGAA
  ACCCTGTCTC AAAACAAACA AACAAACAAA CAAACAAACA AACACACACA CACACACACA
  A
  AAAATAAAGT TGGCTATTAT ACCAGCACGA GTTCAGAACA CCAGCAAATC GAGGACAGGA
  AGTGGGCCAT GGAGCCAGCT GAGAGGCACA GCCTCATGAC TGGATGCCTG AGAGCTCCAG
  GCTTCCCTGT GCCTCCCTCA GTCCTCACTC ACCTCACAAG ATGAGGACTT GCTCTTGGCC
  TTGCAGAGTA GAGCGTTGAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133182422	ENSMUSSNP5670045	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108028444					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50578570 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	within coordinates
Gm44054	predicted gene, 44054	1350 bp downstream
Rr630049	regulatory region 630049	110 bp proximal
Rr630050	regulatory region 630050	205 bp proximal