rs108016554 SNP Detail

Summary

• ID
  rs108016554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39241054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGCCAC TGGGCGGGTA
  GAATATATCT AGCTAAATCT AGAGGTCAGA CTTCTGACCT CTGCCCTACC CAGCACCCAG
  TGCTAGCTTA TGGATAGGCT GCTGTTACCA TCTCTTTCCA CTTCTGTAGG AAGGAACTGC
  CAGGCATGGG CTGTAGCAAA GCAAAGGACT AGCCAGACAG ACACATGTTT GCAAAGGCTG
  R
  CTGGGGTGCC TCTGTGTCTG GGGGTCTGTC CCCAGAGAAG CAGGCTTCAC TGCCCTGTAC
  TACTCTAGAT CCTAGGAATG CTAGCGAAGA AAACTACATC TAAGGCTCTA AGACAGAAAG
  TGATATCAGG TGTGGGGAAA GATGAGCTCT AAGTGATGAG CTGACAAACC AGAATCCAAC
  GAGTGCTGAG CATCCTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133127839	ENSMUSSNP5008884	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108016554					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39241054 () rs orientation: forward

Symbol	Name	Function Class
Gm26008	predicted gene, 26008	1724 bp downstream
Gm53067	predicted gene, 53067	1228 bp downstream
Gm66721	predicted gene, 66721	510 bp downstream
Rr628990	regulatory region 628990	26 bp distal
Rr628991	regulatory region 628991	471 bp proximal