rs108006151 SNP Detail

Summary

• ID
  rs108006151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101868111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTGTGGG AGAAGTGGAG
  GTCACACGTA GCTGAGAGAC TAAAAGGGCA TTGTGTAGTT CACAGTGAAA AGTACGGCCA
  CGGGGGCGGG GGAGTGATTT AGGTTTGCAA GCATTCGGAC CTATATAAAG AAAAAGTGTG
  ATGGTGAATG TTTATAGTCC CAGAAATTGG GAGGTAAAGA CAGGAGGATT CCTGGGGTTC
  R
  CTGACCAACC TACCCTGGGC GAACCAATGG GTGTTAGTTC TTCAGGAGAA AGGTAGGTAG
  AGTAAAAAGA ATTTTTTACT CTGCTTCTCT TATTCATACA TATATACATG TATGCATATA
  TATGTATATA ATATATATGT ATACACACAC ACACAAATGC TACAAAATAA GTTTTAAAGA
  AAGAGTTCTG ATTCTAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147097802	ENSMUSSNP3878323	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320433829	CHEV_2_101877923	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108006151					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101868111 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1646 bp upstream
Rr561615	regulatory region 561615	117 bp distal
Rr561616	regulatory region 561616	711 bp distal
Rr561617	regulatory region 561617	1171 bp proximal
Rr561618	regulatory region 561618	1283 bp proximal
Rr561619	regulatory region 561619	1874 bp proximal
Tssr19089	transcription start site region 19089	1829 bp upstream
Tssr19090	transcription start site region 19090	1850 bp upstream
Tssr19091	transcription start site region 19091	1880 bp upstream