rs107999902 SNP Detail

Summary

• ID
  rs107999902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20562213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTTGTT TTGAGTTGCA
  TTTCCCTGAT GACTAAGGAT GTTGAAAGTT TTCTTTAGGT GTTTCTCAGC CATTCAGTAT
  TCCTCAGTTG AGAATTCTTT GTTTAGCTCC CTACCCCATT TTTAATAGGG TTCTGGTTAC
  TGAGTGCATA CTATGTAGCA GGCTCAGTAG CAAGTGCGGA GGATACAACA TCAAGAGAGC
  Y
  TTGCCCTCTT GGGAAGAACA GCCATTTGGA AGGCCAGGGC TGCAAAAGCC TGCCTCTGAG
  ATTGTAATCT CTGGGTGCCC TTTCCCAGCC TCTTGGCCTG GCACCTCAGA AGAGTGATTT
  CTCTTGTGGA CTTAAGGGCC TTCACTCAAG GAACAACCCT ATCATGGGGT GGGGGGGGGG
  GGGGCGGGTG CGCTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134672213	ENSMUSSNP4089990	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107999902					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20562213 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1843 bp upstream
Rr574081	regulatory region 574081	1210 bp proximal
Rr574082	regulatory region 574082	1339 bp proximal
Tssr32748	transcription start site region 32748	1839 bp upstream
Tssr32749	transcription start site region 32749	1824 bp upstream