rs107999312 SNP Detail

Summary

• ID
  rs107999312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172458738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTCAGGTA GGACGGATGA CCCTACATAA GGGGTGATGT
  CAAGGGGGCA CTGCTGGTGT AGGAGTGCAG CGGCCTGAGG CTGCTTGGAG GCCATGTGGC
  Y
  AGGGACATGG GTCTCCTTCA CTGACCAGTT CTCCTCTATC ACATGTCAGG GAACAGCACT
  TAGAATCCCA TCATCCTCAG GATGACAAAG GTGTGTGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120013311	PARCsnp_1.20734	PARC_SEQ	INBRED	f	SNP	C	T
ss120015537	PARCsnp_1.10906	PARC_SEQ	INBRED	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs107999312					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172458738 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	mRNA-UTR
Gm35601	predicted gene, 35601	1858 bp upstream
Rr396594	regulatory region 396594	1722 bp upstream
Rr423641	regulatory region 423641	1123 bp proximal
Rr423642	regulatory region 423642	1587 bp proximal
Rr423643	regulatory region 423643	1781 bp proximal
Rr423644	regulatory region 423644	1886 bp proximal
Tssr10245	transcription start site region 10245	1893 bp upstream
Tssr15247	transcription start site region 15247	1620 bp downstream
Tssr15248	transcription start site region 15248	1644 bp downstream
Tssr15249	transcription start site region 15249	1760 bp downstream