rs107992950 SNP Detail

Summary

• ID
  rs107992950
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8946753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCTGGGCTCC TGTGGTGCTT TTCTTAAATA ATCAGTCCTA
  TTCAGACAGA GATTCCAAGG TCACTGATCT TACAGCATGC ATATATATAT ATATATATAT
  A
  TATATATATA TGTATGTATT ATATGTATAT GTATATATAT ATGTAAAATA GCCGAATGAC
  TGTATAAGTT GGAATGTTTT CGAAGAATGT GAGGAAAATA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132976296	ENSMUSSNP1002300	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107992950					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8946753 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	1678 bp upstream
Rr626455	regulatory region 626455	1371 bp proximal
Rr626456	regulatory region 626456	1876 bp proximal
Tssr54925	transcription start site region 54925	1674 bp upstream
Tssr54926	transcription start site region 54926	1817 bp upstream
Tssr54927	transcription start site region 54927	1855 bp upstream