rs107983616 SNP Detail

Summary

• ID
  rs107983616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58490510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGTATT AAAGGGTCAG
  AGAACTAGGA AGGTTGAGAC TCGCTGCTTT AGGACAAAAC TCAAAGGTAT ACGAAACCCT
  GCTGTGTAGA GAAACCCTAA AGGAGCCTTG AATTCCACAG CCATAGACGG CCTCACAGGC
  CTTTAGATAA TTGGTCTTCA GCTGGTGGTG CTATTTTGGA GAGACTCTTA GGGACGTGAG
  W
  CTTAGCTGGC TCACATAGGG GTGGGGCTCA CATAGGACTG GAGCTCACAT AGGGGTGGGG
  CTCACATAGG GGTGGGGCTC ACATAGGGGT GGGGCCAGGA GTTGAAGGCC AGGTCAGCTA
  TAACTCTACT TCTCTATGTG ACCGCCACCT CATGCTCCTG CCAACTTGCC TTTCTAGCCA
  TGACAGCCTG TGACCTCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146392632	ENSMUSSNP283665	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107983616					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58490510 () rs orientation: forward

Symbol	Name	Function Class
Lpar1	lysophosphatidic acid receptor 1	Intron
Rr592898	regulatory region 592898	within coordinates